GgaEX6002356 @ galGal3
Exon Skipping
Gene
ENSGALG00000012751 | STAB2
Description
NA
Coordinates
chr1:56875777-56878520:-
Coord C1 exon
chr1:56878387-56878520
Coord A exon
chr1:56876424-56876506
Coord C2 exon
chr1:56875777-56875926
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTCTTTCCTCATCAGAAA
3' ss Score
9.67
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GTGTACATGCCAGAGGGGCTCTGTGGGGAATGGGTTTGTGTGCTATGGAAACATCATGGAGCGCCTCCAAGACCTGAACACAGAAGCAGGAGGACGGTGGCAAGGCAAGCTAACATCTGCCCTAGCACTCATGG
Seq A exon
AAAATGTCTATGAGTGGCCACTGAGCAGCCTGGGACCCTTTACTGTGCTTGTACCAACAAACAGAGGACTCAAAGGTATCAAT
Seq C2 exon
ATAAAGGAACTTCTGAATAACAACCTGAAAGCACAGTACTTTGTGAAACTCCATGTAATTGCTGGTCAGTTGAATACCACTAGCTTGAATAATACTGATATAATATACACTTTGACTGGCAAGTCAGGAGAGATATCAAGGGGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(38.9=30.4),PF0246917=Fasciclin=PU(7.9=21.7)
A:
PF0246917=Fasciclin=FE(21.4=100)
C2:
PF0246917=Fasciclin=FE(38.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGGGAATGGGTTTGTGTG
R:
ACTGACCAGCAATTACATGGAGT
Band lengths:
183-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]