MmuEX6050434 @ mm9
Exon Skipping
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86420544-86423062:-
Coord C1 exon
chr10:86422929-86423062
Coord A exon
chr10:86421104-86421186
Coord C2 exon
chr10:86420544-86420693
Length
83 bp
Sequences
Splice sites
3' ss Seq
GGTGTGTTTGGACTCTTAAGACA
3' ss Score
-0.13
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
ATGCACTTGCCAGAAAGGTTATGTGGGTGATGGCCTGAACTGCTATGGAAACATCATGCAGAGACTCAGAGAATTAAATACTGAACCCAGAGGAATGTGGCAAGGACAGCTGACTTCCTTCATCTCAATCCTGG
Seq A exon
ACAGAACTTATGCCTGGCCACTGAGCAACCTGGGACCCTTCACCGTGCTGCTGCCCTCAGACAAGGGACTAAAAGGGGTTGAT
Seq C2 exon
GTAAAGGAGCTCTTAATGGACAAAGAGGCTGCTCGGTACTTTGTGAAGCTCCACATCATTGCTGGGCAAATGAGCACGGAGCAGATGTATAACTTGGACACCTTCTATACCTTGACGGGAAAGTCAGGGGAAATCATCAACAAGGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(38.9=30.4),PF0246917=Fasciclin=PU(8.0=21.7)
A:
PF0246917=Fasciclin=FE(21.6=100)
C2:
PF0246917=Fasciclin=FE(39.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGGAATGTGGCAAGGAC
R:
TTCCCCTGACTTTCCCGTCAA
Band lengths:
180-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: