RnoEX6030980 @ rn6
Exon Skipping
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27490235-27496635:-
Coord C1 exon
chr7:27496502-27496635
Coord A exon
chr7:27494463-27494545
Coord C2 exon
chr7:27490235-27490384
Length
83 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTTTGGACTCTTAAGACA
3' ss Score
1.86
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
ATGCACTTGCCAGAAAGGTTATGTGGGCGATGGCCTGAACTGCTATGGAAACATCATGCAGAGACTCAGAGAATTAAATACTGAACCCAGAGGGATGTGGCAAGGACAGCTGACCTCTTTCATCTCCATCCTGG
Seq A exon
ACAGGACTTATGCCTGGCCGCTGAGCAACCTGGGACCCTTCACTGTGCTGCTGCCCTCAGACAAGGGGCTAAAAGGGGTTGAT
Seq C2 exon
GTAAAGGAGCTCTTGATGGACAAAGAGGCTGCTCGGTACTTCGCGAAGCTCCACATCATTGCTGGGCAAATGAGCATGGAGCAGATGTATCACTTGGACACCTTCTACACCTTGACGGGAAAGTCAGGGGAAATCTTCAACAAAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948-'4-18,'4-13,15-18=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(38.9=30.4),PF0246917=Fasciclin=PU(8.0=21.7)
A:
PF0246917=Fasciclin=FE(21.6=100)
C2:
PF0246917=Fasciclin=FE(39.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACCCAGCTTCACAGTTT
R:
GCCTTCATGTTGCTCAATGCT
Band lengths:
183-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]