RnoEX0086544 @ rn6
Exon Skipping
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27494463-27503217:-
Coord C1 exon
chr7:27503084-27503217
Coord A exon
chr7:27496502-27496635
Coord C2 exon
chr7:27494463-27494545
Length
134 bp
Sequences
Splice sites
3' ss Seq
TGATTCCACCCCCTCTACAGATG
3' ss Score
8.61
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
TCCCACTGCGAGTGTAAAGAACATTACCGCAATTTTGTACCTGGAGTGGGGTGCAGTATGACGGATATCTGTGAATCGAACAACCCATGTCATAAGAATGCAAACTGCAGCACAGTCTCACCAGGCAAAACCAA
Seq A exon
ATGCACTTGCCAGAAAGGTTATGTGGGCGATGGCCTGAACTGCTATGGAAACATCATGCAGAGACTCAGAGAATTAAATACTGAACCCAGAGGGATGTGGCAAGGACAGCTGACCTCTTTCATCTCCATCCTGG
Seq C2 exon
ACAGGACTTATGCCTGGCCGCTGAGCAACCTGGGACCCTTCACTGTGCTGCTGCCCTCAGACAAGGGGCTAAAAGGGGTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948-'13-13,'13-12,14-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PU(58.3=46.7)
A:
PF129472=EGF_3=PD(38.9=30.4),PF0246917=Fasciclin=PU(8.0=21.7)
C2:
PF0246917=Fasciclin=FE(21.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACTGCGAGTGTAAAGAACA
R:
ACCCCTTTTAGCCCCTTGTCT
Band lengths:
212-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]