MmuEX6050433 @ mm10
Exon Skipping
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86958359-86967753:-
Coord C1 exon
chr10:86967620-86967753
Coord A exon
chr10:86960184-86960317
Coord C2 exon
chr10:86958359-86958441
Length
134 bp
Sequences
Splice sites
3' ss Seq
TGATTTCACCCTCTCTACAGATG
3' ss Score
10.5
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
TCTCACTGCGAGTGTAAAGAACATTACCGAAATTTTGTACCTGGAGTGGGGTGCAGTATGACGGACATCTGTGAATCAAAAAACCCATGTCATAAGAATGCGAACTGCAGCACAGTCTCACCAGGCCAAACCCA
Seq A exon
ATGCACTTGCCAGAAAGGTTATGTGGGTGATGGCCTGAACTGCTATGGAAACATCATGCAGAGACTCAGAGAATTAAATACTGAACCCAGAGGAATGTGGCAAGGACAGCTGACTTCCTTCATCTCAATCCTGG
Seq C2 exon
ACAGAACTTATGCCTGGCCACTGAGCAACCTGGGACCCTTCACCGTGCTGCTGCCCTCAGACAAGGGACTAAAAGGGGTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-'10-16,'10-15,11-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PU(58.3=46.7)
A:
PF129472=EGF_3=PD(38.9=30.4),PF0246917=Fasciclin=PU(8.0=21.7)
C2:
PF0246917=Fasciclin=FE(21.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGAGTGTAAAGAACATTACCGA
R:
TCAACCCCTTTTAGTCCCTTGT
Band lengths:
210-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types