BtaEX6022831 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006010 | STAB2
Description
Bos taurus stabilin 2 (STAB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206679]
Coordinates
chr5:67652991-67659376:+
Coord C1 exon
chr5:67652991-67653124
Coord A exon
chr5:67657573-67657706
Coord C2 exon
chr5:67659294-67659376
Length
134 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCACGCTCTCTGTAGATG
3' ss Score
9.77
5' ss Seq
TGGGTATGC
5' ss Score
6.57
Exon sequences
Seq C1 exon
GCTTACTGCGAGTGTAAGCAACATTACCGCAACTTTGTCCCTGGAGTGGGATGCAGTATGACCGATGTGTGTGAATCTAACAACCCCTGCCACACGCATGCAGACTGCACCACCATCGCACCAGGCCAAACCAA
Seq A exon
ATGCACTTGTCGGAAAGGTTACGTAGGCGATGGCTCAACCTGTTACGGAAACATCATGGAGCTACTCAGAGAATTAAACACCGAACCCAGAGGAAAATGGCAAGGAAGGCTGACCTCTTTCATCTCGCTCCTGG
Seq C2 exon
ACAAAGCCTATGCCTGGCCACTGAGTAACCTGGGACCATTTACTGTGCTGTTGCCGACAGACAAGGGATTAAAAGGATTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006010-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PU(58.3=46.7)
A:
PF129472=EGF_3=PD(38.9=30.4),PF0246917=Fasciclin=PU(7.9=21.7)
C2:
PF0246917=Fasciclin=FE(21.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTACTGCGAGTGTAAGCAACA
R:
TCCTTTTAATCCCTTGTCTGTCGG
Band lengths:
210-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]