DreEX6001357 @ danRer10
Exon Skipping
Gene
ENSDARG00000045748 | stab2
Description
stabilin 2 [Source:ZFIN;Acc:ZDB-GENE-041210-336]
Coordinates
chr4:10731354-10733491:+
Coord C1 exon
chr4:10731354-10731484
Coord A exon
chr4:10731575-10731708
Coord C2 exon
chr4:10733409-10733491
Length
134 bp
Sequences
Splice sites
3' ss Seq
TTCAATTGTAATAATTTCAGATG
3' ss Score
6.24
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GCTCACTGTGAGTGTTTGGAGGGATTCGAGAAGTTTGTTGAAGGGCAGGGCTGCAGTATTATAGATCTGTGCAAACCAGACTCCTGCCATAAATACGCCACCTGTGCCACAGCTGAACCAGGAACAGTGGA
Seq A exon
ATGTAACTGCCGCGAAGGTTTCATTGGGAATGGAAAAATATGCTTTGGGGACATCATTCAACAGCTGAATGAAATGAATTCGAAGCCAGGAGGAAAATGGACGGGTCAGCTCTCCAGTGCCATCACACTGTTCA
Seq C2 exon
ATCAAGTCACAGGATGGTTCTTAACCGCTCGTGGACCATTTACCGTGTTTGTCCCAGTGAACAAGGCTTTTAAGGGCACGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045748-'9-12,'9-10,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PU(57.1=45.5)
A:
PF129472=EGF_3=PD(40.0=30.4),PF0246917=Fasciclin=PU(8.1=21.7)
C2:
PF0246917=Fasciclin=FE(21.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGTGAGTGTTTGGAGGGA
R:
AGACGTGCCCTTAAAAGCCTT
Band lengths:
211-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]