MmuALTA1027294-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86958359-86960317:-
Coord C1 exon
chr10:86960184-86960317
Coord A exon
chr10:86958438-86958441
Coord C2 exon
chr10:86958359-86958437
Length
4 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGT
5' ss Score
7.43
3' ss Seq
GGTGTGTTTGGACTCTTAAGACA
3' ss Score
-0.13
Exon sequences
Seq C1 exon
ATGCACTTGCCAGAAAGGTTATGTGGGTGATGGCCTGAACTGCTATGGAAACATCATGCAGAGACTCAGAGAATTAAATACTGAACCCAGAGGAATGTGGCAAGGACAGCTGACTTCCTTCATCTCAATCCTGG
Seq A exon
ACAG
Seq C2 exon
AACTTATGCCTGGCCACTGAGCAACCTGGGACCCTTCACCGTGCTGCTGCCCTCAGACAAGGGACTAAAAGGGGTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-11-17,11-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(38.9=30.4),PF0246917=Fasciclin=PU(8.0=21.7)
A:
NA
C2:
PF0246917=Fasciclin=FE(21.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAACCCAGAGGAATGTGGC
R:
TGAAGGGTCCCAGGTTGCTC
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types