RnoALTA0038815-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27494463-27496635:-
Coord C1 exon
chr7:27496502-27496635
Coord A exon
chr7:27494542-27494545
Coord C2 exon
chr7:27494463-27494541
Length
4 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGT
5' ss Score
7.43
3' ss Seq
TGTGTGTTTGGACTCTTAAGACA
3' ss Score
1.86
Exon sequences
Seq C1 exon
ATGCACTTGCCAGAAAGGTTATGTGGGCGATGGCCTGAACTGCTATGGAAACATCATGCAGAGACTCAGAGAATTAAATACTGAACCCAGAGGGATGTGGCAAGGACAGCTGACCTCTTTCATCTCCATCCTGG
Seq A exon
ACAG
Seq C2 exon
GACTTATGCCTGGCCGCTGAGCAACCTGGGACCCTTCACTGTGCTGCTGCCCTCAGACAAGGGGCTAAAAGGGGTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948-14-14,14-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(38.9=30.4),PF0246917=Fasciclin=PU(8.0=21.7)
A:
NA
C2:
PF0246917=Fasciclin=FE(21.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGGACAGCTGACCTCTTT
R:
CCCTTTTAGCCCCTTGTCTGA
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]