Special

GgaEX6002988 @ galGal3

Exon Skipping

Gene
Description
NA
Coordinates
chr1:69993149-69996045:-
Coord C1 exon
chr1:69995794-69996045
Coord A exon
chr1:69994192-69994336
Coord C2 exon
chr1:69993149-69993299
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTCTGTGTCTTGCATTGTAGGTA
3' ss Score
10.87
5' ss Seq
GAGGTACTT
5' ss Score
7.82
Exon sequences
Seq C1 exon
GTACCAACTGAACCTCTTTGCAAGAATGTGCCTGGACCGCCAGTATCTAGCCATCAACCAGATTTCTGCACAGCTATCAGTAGACTTGATCCTGCGATGCATGTCTGATGAAAGCCTACCTTATGACCTCCGGGCTTCTTTTTGCCGGTTGATGCTACACATGCACGTGGACAGAGATCCTCAGGAGTCAGTGGTACCTGTCAGATACGCCAGATTGTGGACTGAAATTCCTACCAAGATCACAATTCATGA
Seq A exon
GTATGACTCTTTCACAGATTCTTCAAGAAATGAAATGAAGAGGAAATTTGCACTAACTATGGAATTTGTGGAAGAGTACTTGAAAGAAGTTGTAAATCAGCCTTTTCCTTTTGGTGACAAAGAGAAAAATAAACTTACATTTGAG
Seq C2 exon
GTGGTACATCTAGCTCGAAATCTCATATACTTTGGCTTTTATAGTTTTAGTGAGCTTCTCAGACTCACCCGGACACTTCTGGCAATTCTAGATATTGTTCAAGTTCCTATGTCATCATACTTTGAAAGGTTAAGCAAGTTTCAGGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014071-'21-25,'21-24,22-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCGATGCATGTCTGATGA
R:
AGAATTGCCAGAAGTGTCCGG
Band lengths:
251-396
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]