MmuEX6007918 @ mm9
Exon Skipping
Gene
ENSMUSG00000030287 | Itpr2
Description
inositol 1,4,5-triphosphate receptor 2 [Source:MGI Symbol;Acc:MGI:99418]
Coordinates
chr6:146319775-146323137:-
Coord C1 exon
chr6:146322886-146323137
Coord A exon
chr6:146321616-146321760
Coord C2 exon
chr6:146319775-146319925
Length
145 bp
Sequences
Splice sites
3' ss Seq
TCTTGTGTCTGTCTGGCCAGGTA
3' ss Score
9.18
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
GTACCAGCTAAACCTCTTTGCAAGGATGTGCTTGGACCGCCAGTATCTGGCCATCAACCAGATTTCAACACAGTTGTCCGTAGACCTGATCCTGCGGTGTGTGTCTGACGAGAGTCTGCCCTTTGACCTCAGAGCATCTTTCTGCCGACTCATGCTCCACATGCACGTTGACCGCGACCCCCAGGAGTCTGTAGTGCCTGTTCGCTATGCCCGCCTCTGGACCGAAATCCCCACAAAGATCACGATTCATGA
Seq A exon
GTATGACTCCATTACAGACTCTTCCAGAAATGACATGAAGAGGAAGTTTGCCCTGACGATGGAATTTGTCGAAGAATATTTGAAAGAAGTTGTAAATCAACCATTTCCTTTTGGAGACAAAGAGAAAAATAAACTGACATTTGAG
Seq C2 exon
GTGGTTCACCTAGCCCGGAACCTCATCTATTTCGGATTCTACAGCTTCAGCGAGTTACTGCGGCTGACGAGAACTCTGCTGGCGATCCTAGACATCGTCCAGGCCCCCATGTCCTCATATTTCGAAAGATTAAGCAAGTTCCAAGATGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030287-'20-21,'20-20,22-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTTTGACCTCAGAGCATC
R:
AATATGAGGACATGGGGGCCT
Band lengths:
256-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: