DreEX6023186 @ danRer10
Exon Skipping
Gene
ENSDARG00000014655 | itpr1a
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39954914-39956591:+
Coord C1 exon
chr6:39954914-39955165
Coord A exon
chr6:39955249-39955390
Coord C2 exon
chr6:39956444-39956591
Length
142 bp
Sequences
Splice sites
3' ss Seq
GTTTGCTGTTTCTTGAGCAGTTA
3' ss Score
6.03
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
ATATCAGCTGAATTTGTTTGCTCGGATGTGTCTGGATCGACAGTATCTTGCGATTAACAAGATATCAGCACAGCTGGATGTGGATCTGATTCTGCGCTGCATGTCAGATGAAGATTTGCCCTTTGACCTCAGAGCATCGTTCTGCCGCATGATGCTGCACATGCATGTAGACCGTGACCCTCAGGAGCAGGTCACCCCGGTCAAATATGCTCGACTGTGGTCTGAAATCCCATCACAAATTTCCATTGATGA
Seq A exon
TTATGATAATGATGGGACGTCAAGTGATGAAGTGAAAGAGCGCTTCTCTCAGACGATGGAGTTTGTGGAGAATTACCTGAGGGATGTTGTCTGCCAGAGTTTCCCGTTCTCTGATAAGGAGAAAAACAAACTCACTTTTGAG
Seq C2 exon
GTGGTGAACCTGGCAAGAAACCTGATCTATTTTGGTTTCTATAACTTCAGTGATCTGCTAAGGTTAACAAAAATCCTATTGGCAATCCTGGACTGTGTCCACATAAGCACTCCCTTCCACATCAAGCTGGATAGAGAACCCGGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655-'20-24,'20-23,21-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.083 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGATGTGTCTGGATCGACA
R:
GGTTTCTTGCCAGGTTCACCA
Band lengths:
253-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]