RnoEX6014539 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140419812-140421566:+
Coord C1 exon
chr4:140419812-140420063
Coord A exon
chr4:140420602-140420743
Coord C2 exon
chr4:140421413-140421566
Length
142 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTCCCTCCCTCTCAGCTA
3' ss Score
9.3
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTATCAGCTGAACCTCTTTGCAAGGATGTGTCTGGACCGCCAGTACCTGGCCATCAATGAAATATCCGGGCAGCTGGATGTTGACCTCATCCTCCGCTGCATGTCCGATGAGAACCTCCCCTATGACCTCAGAGCATCCTTTTGCCGCCTCATGCTTCACATGCATGTGGACCGAGATCCCCAGGAGCAGGTGACCCCTGTGAAATACGCCCGTCTGTGGTCAGAAATTCCCTCCGAGATCGCCATTGACGA
Seq A exon
CTATGACAGCAGTGGAGCATCGAAGGATGAAATCAAGGAGAGGTTTGCTCAGACGATGGAGTTTGTGGAGGAGTACCTGAGAGATGTGGTTTGTCAAAGATTCCCCTTTTCTGATAAGGAGAAAAATAAGCTCACATTTGAG
Seq C2 exon
GTTGTGAACTTAGCCAGGAACCTCATATACTTTGGCTTCTACAACTTTTCTGACCTTCTCCGATTAACCAAGATCCTCTTGGCAATCTTAGACTGTGTTCATGTGACAACCATCTTCCCCATTAGCAAGATGACGAAAGGCGAAGAGAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'37-35,'37-32,38-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTGCCGCCTCATGCTTCA
R:
TTCGCCTTTCGTCATCTTGCT
Band lengths:
258-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]