DreEX0040324 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35673039-35675543:-
Coord C1 exon
chr11:35675292-35675543
Coord A exon
chr11:35674764-35674905
Coord C2 exon
chr11:35673039-35673192
Length
142 bp
Sequences
Splice sites
3' ss Seq
ACTGTTGTGTTTGGTTTTAGTTA
3' ss Score
8.81
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
ATATCAGCTGAATCTGTTTGCTCGGATGTGTTTGGACCGCCAGTATTTGGCCATTGAGAAGATCTCGGGCCAGCTGGATGTGGATCTGATCCTGCGTTGTATGTCAGATGAAGACCTGCCCTATGACCTCCGGGCCTCCTTCTGTAGACTGATGCTTCACATGCATGTGGATCGAGACCCACAGGAGCAGGTCATGCCTGTCAAATATGCCCGGCTGTGGTCCGAGATCCCCTCCAAAATCGCCATCGATGA
Seq A exon
TTATGACAATGACGGAACCAGCAGAGATGAGATAAAGGAGCGTTTTGCGCTGACAATGGATTTTGTGGAGAACTACCTCAGAGATGTGGTCCTTCAAAATGTTCCTTTCTCCGATAAAGAGAAAAACAAGCTCACTTTTGAG
Seq C2 exon
GTTGTGAATTTAGCAAGAAACCTCATTTACTTCGGCTTTTACAACTTCAGCGACTTGTTACGTTTGACGAAGATCCTTTTGGCCATTTTGGACTGCGTTCATGTCAGCACCATTTATCCCATCAACAAGATGGAAAAAGGAGATGAGTCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'23-22,'23-21,24-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACCTGCCCTATGACCTCC
R:
AATGGTGCTGACATGAACGCA
Band lengths:
256-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]