GgaEX1030854 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18442073-18444876:+
Coord C1 exon
chr12:18442073-18442324
Coord A exon
chr12:18443668-18443809
Coord C2 exon
chr12:18444723-18444876
Length
142 bp
Sequences
Splice sites
3' ss Seq
CTGTTTGTTTTCCCCTTCAGCTA
3' ss Score
11.09
5' ss Seq
GAGGTAGTT
5' ss Score
5.77
Exon sequences
Seq C1 exon
ATACCAGCTGAACCTCTTTGCCAGAATGTGCCTTGATCGGCAGTACTTGGCCATAAACGAGATTTCTGGCCAGCTGGACGTGGATCTCATTCTCCGCTGCATGTCTGATGAAAACTTGCCGTATGACCTGAGAGCGTCGTTCTGCCGGCTCATGCTGCACATGCACGTTGATCGTGACCCCCAGGAGCAGGTCACACCAGTGAAGTATGCACGGCTGTGGTCTGAGATACCTTCTGAAATCGCGATTGATGA
Seq A exon
CTATGATAGCAGCGGAACTTCCAAAGATGAAATTAAAGAGAGATTTGCGCAAACGATGGAGTTTGTAGAGGAGTATTTAAGAGATGTGGTGTGTCAGAGATTCCCTTTCTCTGATAAAGAGAAGAATAAGCTCACTTTTGAG
Seq C2 exon
GTGGTTAACTTAGCCAGAAATCTGATATATTTTGGTTTCTACAACTTCTGTGACCTCCTCAGGCTGACCAAAATCCTCCTTGCTATATTAGACTGTGTGCACATCACTACCATCTTCCCTATTACCAAAATGGCAAAAGGCGAGGAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'25-31,'25-30,27-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGATCTCATTCTCCGCTG
R:
TTTTGGTCAGCCTGAGGAGGT
Band lengths:
247-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]