GgaEX1030854 @ galGal3
Exon Skipping
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19085709-19088512:+
Coord C1 exon
chr12:19085709-19085960
Coord A exon
chr12:19087304-19087445
Coord C2 exon
chr12:19088359-19088512
Length
142 bp
Sequences
Splice sites
3' ss Seq
CTGTTTGTTTTCCCCTTCAGCTA
3' ss Score
11.09
5' ss Seq
GAGGTAGTT
5' ss Score
5.77
Exon sequences
Seq C1 exon
ATACCAGCTGAACCTCTTTGCCAGAATGTGCCTTGATCGGCAGTACTTGGCCATAAACGAGATTTCTGGCCAGCTGGACGTGGATCTCATTCTCCGCTGCATGTCTGATGAAAACTTGCCGTATGACCTGAGAGCGTCGTTCTGCCGGCTCATGCTGCACATGCACGTTGATCGTGACCCCCAGGAGCAGGTCACACCAGTGAAGTATGCACGGCTGTGGTCTGAGATACCTTCTGAAATCGCGATTGATGA
Seq A exon
CTATGATAGCAGCGGAACTTCCAAAGATGAAATTAAAGAGAGATTTGCGCAAACGATGGAGTTTGTAGAGGAGTATTTAAGAGATGTGGTGTGTCAGAGATTCCCTTTCTCTGATAAAGAGAAGAATAAGCTCACTTTTGAG
Seq C2 exon
GTGGTTAACTTAGCCAGAAATCTGATATATTTTGGTTTCTACAACTTCTGTGACCTCCTCAGGCTGACCAAAATCCTCCTTGCTATATTAGACTGTGTGCACATCACTACCATCTTCCCTATTACCAAAATGGCAAAAGGCGAGGAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'22-23,'22-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGATCTCATTCTCCGCTG
R:
TTTTGGTCAGCCTGAGGAGGT
Band lengths:
247-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]