BtaEX6093947 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21789418-21791170:-
Coord C1 exon
chr22:21790919-21791170
Coord A exon
chr22:21790134-21790275
Coord C2 exon
chr22:21789418-21789571
Length
142 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTCCTTTCCTTTTAGCTA
3' ss Score
11.07
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
GTACCAGCTGAACCTCTTTGCGAGGATGTGCCTGGACCGCCAGTACCTTGCCATCAACGAGATCTCGGGCCAACTGGACGTGGATCTCATTCTCCGCTGCATGTCCGACGAGAACCTGCCCTACGACCTGCGGGCATCCTTCTGCCGTCTCATGCTCCACATGCACGTGGACCGAGACCCCCAGGAGCAGGTCACCCCCGTGAAATACGCCCGCCTCTGGTCTGAGATCCCCTCCGAGATCGCCATTGATGA
Seq A exon
CTACGATAGTAGTGGAACCTCCAAAGATGAAATTAAGGAGAGGTTCGCTCAGACCATGGAATTTGTGGAGGAATATTTAAGAGATGTGGTGTGTCAGAGGTTCCCTTTCTCTGATAAGGAGAAAAATAAGCTTACATTTGAG
Seq C2 exon
GTTGTCAACCTAGCTAGGAATCTCATCTACTTTGGTTTCTACAACTTCTCCGACCTTCTCCGATTAACCAAAATCCTCCTGGCCATATTGGACTGTGTGCACGTGACCACAATCTTCCCCATCAGCAAGATGGCGAAGGGAGAGGAGAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'20-21,'20-20,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTTCTGCCGTCTCATGC
R:
GCTGATGGGGAAGATTGTGGT
Band lengths:
244-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]