RnoEX6015627 @ rn6
Exon Skipping
Gene
ENSRNOG00000001804 | Itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:RGD Symbol;Acc:69649]
Coordinates
chr4:180668046-180671624:-
Coord C1 exon
chr4:180671373-180671624
Coord A exon
chr4:180670029-180670173
Coord C2 exon
chr4:180668046-180668196
Length
145 bp
Sequences
Splice sites
3' ss Seq
TCTTCTATCTGTCTGGGCAGGTA
3' ss Score
10.6
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
GTACCAGCTAAACCTCTTTGCAAGGATGTGCTTGGACCGCCAGTACCTGGCCATCAACCAGATTTCAACACAGCTGTCTGTAGACCTGATCCTGCGGTGCGTGTCTGACGAGAGCCTGCCCTTTGACCTCCGAGCCTCTTTCTGCCGACTCATGCTCCACATGCACGTGGACCGGGACCCCCAGGAGTCTGTGGTGCCTGTCCGCTACGCCCGGCTCTGGACTGAGATCCCCACCAAGATCACGATCCATGA
Seq A exon
GTATGACTCCATCACAGACTCTTCCAGAAATGACATGAAGAGGAAGTTTGCCCTGACAATGGAATTTGTCGAAGAATATTTGAAAGAAGTTGTGAATCAACCGTTTCCTTTTGGAGACAAAGAGAAAAATAAACTGACATTTGAG
Seq C2 exon
GTGGTCCACCTGGCCCGGAACCTCATCTACTTCGGATTCTACAGCTTCAGCGAGTTGCTGCGGCTGACGAGAACTCTGCTGGCGATCCTGGACATCGTCCAGGCCCCCATGTCGTCGTATTTTGAAAGATTAAGCAAGTTTCAAGATGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001804-'19-21,'19-19,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACCTCCGAGCCTCTTTCT
R:
AAAATACGACGACATGGGGGC
Band lengths:
253-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]