GgaEX6003246 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr1:75620884-75623508:+
Coord C1 exon
chr1:75620884-75620958
Coord A exon
chr1:75621177-75621330
Coord C2 exon
chr1:75623306-75623508
Length
154 bp
Sequences
Splice sites
3' ss Seq
ACTTTCAATTCCTTTCTCAGGAT
3' ss Score
9.77
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GGTGGTGTGGATGATACAATCTCATTAACAGCCTATGTCGCTGCTGCCCTTCTTGAGCTCCAATTGGAGAAAAAT
Seq A exon
GATACAATGCTGGATAACGCCTTACGTTGTCTTAAGAATGTTACATTTGATGAGACCAGCCTTTATGTCAAGGCCTTGATGGCTTACGTATTCACACTGACGGAGGATGTGGAGATGAGACAGGAGCTCCTGGATAAGTTAGAGAAAGAAACTG
Seq C2 exon
TTTTTTTTCTCTATGCATCAGCAGAGCATCTGACATCAGATTCCAGTAGTGAAGAATCTTCTTCTATGATTGAGATAGTAGCCTATATCCTTCTGGCTCATGTTTCCAAACCAGACTTTGCTGTCAATGACAGTGCAGTCAGCAAGCTTGTGCACTGGCTCAGTAAACAAAGAAATGCTCTCGGGGGATTTGCTTCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014252-'66-63,'66-57,67-63=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(10.0=100)
A:
PF076789=A2M_comp=FE(21.3=100)
C2:
PF076789=A2M_comp=FE(28.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACAGCCTATGTCGCTGCTG
R:
GCAAATCCCCCGAGAGCATTT
Band lengths:
243-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]