GgaEX6003284 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79355212-79357875:+
Coord C1 exon
chr1:79355212-79355333
Coord A exon
chr1:79356939-79356990
Coord C2 exon
chr1:79357792-79357875
Length
52 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTCATTCCACCCAAGCCT
3' ss Score
2.96
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GGCTGGTGGAGTTCTTGGTGAGCACTGAGGCCCTCCAGAACCAGCAGCCATGCAGAAACACCACAGTGGAGACCCCTGAAAAAGGGCGGAAGGACACAGTCATCAGGCAGCTGTTGGTGGAG
Seq A exon
CCTGAAGGAGTTGAGAAGGAAACTGTTCAGAACTTGGTGCTCTGTTTAAAAG
Seq C2 exon
GAGAGTCCGTGAAAGAGAAGTTTTCTCTGTTGCTTCCTTCAAATGTGGTACAAGACTCAGGCAGAGCATATTTCTCAGTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964-'34-37,'34-35,35-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.293 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCATGCAGAAACACCACAG
R:
GCTCTGCCTGAGTCTTGTACC
Band lengths:
144-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]