BtaEX6024107 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018137 | A2M
Description
Bos taurus alpha-2-macroglobulin (A2M), mRNA. [Source:RefSeq mRNA;Acc:NM_001109795]
Coordinates
chr5:101325567-101329119:+
Coord C1 exon
chr5:101325567-101325688
Coord A exon
chr5:101327233-101327284
Coord C2 exon
chr5:101329012-101329119
Length
52 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTTTCCACCTAAAGCCT
3' ss Score
6.86
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGAATGTGAATTTCACAGTGAGTGCAGAGGCAGTGGAGTCTCAAGAGCTATGTGGGAGTGAAGTGCCTGTGGTCCCTGAGCATGGAAGGAAAGACACAATCATCAAGCCCCTGTTGGTTGAA
Seq A exon
CCTGAAGGACTAGAGAAGGAAGTAATATTCAACTCCCTGCTTTGTCCATCAG
Seq C2 exon
TTGACTTTGTCTTTCTCGGTGCCGAAGATGGAGGCCAAGTACTCCGCCATTTCCCACCCGCCGCCGCCACCGACACTGCTGCCGACGCCCACGACCCCGCCCGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018137-'20-26,'20-25,21-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.514
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATGTGGGAGTGAAGTGCC
R:
GTGGGAAATGGCGGAGTACTT
Band lengths:
133-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]