DreEX0067503 @ danRer10
Exon Skipping
Gene
ENSDARG00000095315 | si:ch211-212c13.9
Description
si:ch211-212c13.9 [Source:ZFIN;Acc:ZDB-GENE-131118-22]
Coordinates
chr15:21156983-21157403:-
Coord C1 exon
chr15:21157282-21157403
Coord A exon
chr15:21157148-21157199
Coord C2 exon
chr15:21156983-21157066
Length
52 bp
Sequences
Splice sites
3' ss Seq
TTTATTGTTTAATGCTGCAGGCT
3' ss Score
6.21
5' ss Seq
AGGGTTTGA
5' ss Score
-0.11
Exon sequences
Seq C1 exon
GAGTGGTGAATGTTACAGTCAGAGCAGAGGCAGAGGCGTCCCAGACTGTGTGTGACAATGAGATTGTGAGTGTGCCAGAGAGAGGACGCATTGACACCGTCACACGAAGTCTGCTTGTACAG
Seq A exon
GCTGAAGGAATCAAAAAGGCAAAGACCAACAGCTGGTTACTGTGTCCAAAGG
Seq C2 exon
GGGACAGTCTTTTAGAGGAAATAGATCTGACTCTTCCTAAAGACATGATAGAGGGATCAGTCACATCCTCTGTTTCCGTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095315_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTGTGCCAGAGAGAGGAC
R:
ACGGAAACAGAGGATGTGACTG
Band lengths:
135-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]