GgaEX6003321 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79477605-79479019:-
Coord C1 exon
chr1:79478932-79479019
Coord A exon
chr1:79478331-79478559
Coord C2 exon
chr1:79477605-79477731
Length
229 bp
Sequences
Splice sites
3' ss Seq
GATTTTCTTGTTTTCCTCAGTTC
3' ss Score
8.75
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
AATTTTCAAAGATTACTGCTGCTGGTGTTGTTAACACTGTTCGGAAATACTTCCCTGAGACCTGGATTTGGGATCTGGTTCACACTGA
Seq A exon
TTCCACTGGAGAGGCTAATATCTTCTACACCGTCCCTGATACCATCACAGAATGGAAAGCCAGTGCTTTCTGTTTGCAGGATGATGCTGGGTTTGGCATCTCCTCACCTGTTTCACTGACAGCATTCCAACCATTCTTTGTGGATCTTGCCTTGCCATACTCCGTCATTCGAGGAGAAAAAATTAATTTAATAGCCAACATTTTCAATTACCTTGACAAGTGCATTCAG
Seq C2 exon
ATCAGTGCCATACTGGCAGAGTCAAGTGACTACAAGGCAGAAGTCCTTTCACCAGAAGGAAACACAGCAAGAGTGTGTGCCAATGAAAGAAAAACCTATATTTGGGCTGTTAGCCCCCTCAGTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PU(9.9=30.0)
A:
PF0020717=A2M=FE(83.5=100)
C2:
PF0020717=A2M=PD(4.4=9.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCAAAGATTACTGCTGCTGGTG
R:
CAAGACTGAGGGGGCTAACAG
Band lengths:
212-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]