BtaEX6024051 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005243 | OVOS2
Description
Bos taurus ovostatin 2 (OVOS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001164024]
Coordinates
chr5:101163940-101165407:+
Coord C1 exon
chr5:101163940-101164036
Coord A exon
chr5:101164484-101164712
Coord C2 exon
chr5:101165278-101165407
Length
229 bp
Sequences
Splice sites
3' ss Seq
CCTATAATCTCTCTTTGTAGCTC
3' ss Score
8.82
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
TCACAAGGGAGAATTTTGACTCCATAGAACGGGTTATAATTGAAACAGTAAGAACAAACTTTCCAGAAACATGGATTTGGGACCTGGTCAGCATTGA
Seq A exon
CTCCTCCGGTTCAGCAAATCTTTCATTCACCATCCCTGATACTATAACGCAATGGGAAGCAAGTGGCTTCTGTGTGAACAGTGAGGCTGGATTTGGCATTTCATCAATAGCTTCTCTGGAAGCCTCCCAACCTTTCTTTGTTGAAATAACCTCCCCCTCTTCAGTTGTTCGGAATGAACGGTCTGATCTGATTGTCAGTGTCTTCAGCTACCTGAATACCTGTGTAGAG
Seq C2 exon
ATTTTCACTCAACTAGAAGCATCTCAGGATTTTGAGGCAGATATCAGTACCCCTAAAGACAACAGCAGTGAGATTATCCAAGCTTCAGAGAAAAAGACATATGTCTGGACTGTTACTCCTAAGAAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005243-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.091
Domain overlap (PFAM):
C1:
PF0020717=A2M=PU(9.9=27.3)
A:
PF0020717=A2M=FE(83.5=100)
C2:
PF0020717=A2M=PD(4.4=9.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGACTCCATAGAACGGGTT
R:
CCAGCTTCTTAGGAGTAACAGTCC
Band lengths:
214-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]