RnoEX6015270 @ rn6
Exon Skipping
Gene
ENSRNOG00000007247 | A2ml1
Description
alpha-2-macroglobulin-like 1 [Source:RGD Symbol;Acc:1565709]
Coordinates
chr4:161884150-161885716:-
Coord C1 exon
chr4:161885614-161885716
Coord A exon
chr4:161884929-161885157
Coord C2 exon
chr4:161884150-161884283
Length
229 bp
Sequences
Splice sites
3' ss Seq
CCAACAGCCTGTCTTCTCAGTTC
3' ss Score
4.68
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
TTCATGACGCTCCTGACAGCATCAGCCATGCAAAAGTGGCCATCAAAGAGACAGTCAGGACAAACTTCCCCAAGACCTGGCTGTGGAACCTCATCAGCGTGGA
Seq A exon
TTCCTCAGGCTCAACCAATGTTTCGTTCCTTGTCCCTGATACCATCACCCAGTGGCAGGCCAGCACCTTCTGTGTCAACGGCAATGCTGGGTTCGGCATTTCACCCAAAGTGTCCCTACAAATCTCCCAGCCCTTCTTCATGGAAGTTACCTCACCCTTTTCTGTTGTTCGAAGTGAACAGAGTGACCTCATTGTCACTGTCTTCAACTACCGGACTACATGTGTAGAG
Seq C2 exon
ATTTCTGTTCAGTTAGAAGCATCTGAGAATTATGAAGCAAGCATCAACACCCAGAGTAACACTGACAGTGAGGTCCTGCCGGCTGGAGAACAGAAAACGTATGTCTGGACCGTTACACCAAAAACACTGGGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007247-'22-19,'22-18,23-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.244
Domain overlap (PFAM):
C1:
PF0020717=A2M=PU(9.9=25.7)
A:
PF0020717=A2M=FE(83.5=100)
C2:
PF0020717=A2M=PD(4.4=8.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATGACGCTCCTGACAGCA
R:
TACCCAGTGTTTTTGGTGTAACGG
Band lengths:
236-465
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]