MmuEX6007306 @ mm10
Exon Skipping
Gene
ENSMUSG00000047228 | A2ml1
Description
alpha-2-macroglobulin like 1 [Source:MGI Symbol;Acc:MGI:3039594]
Coordinates
chr6:128557500-128559096:-
Coord C1 exon
chr6:128558994-128559096
Coord A exon
chr6:128558283-128558511
Coord C2 exon
chr6:128557500-128557629
Length
229 bp
Sequences
Splice sites
3' ss Seq
ACAACAGCCTGTCTTCTCAGTTC
3' ss Score
4.95
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
TTCATGACTCTGTGGACAGCATCAGCCATGCAAAAGTGGCCATCAAAGAGACAGTGAGGACAAACTTCCCCAGGACATGGATATGGAACCTTGTCAGTGTAGA
Seq A exon
TTCCTCAGGCACAGCAAATGTCTCGTTCCTGGTCCCTGATACCATCACCCAGTGGGAGGCCAGCGCCTTCTGTGTCAATGGCAATGCTGGGTTTGGCATTTCACCCAAAGTGTCCCTACAGATCTCCCAGCCCTTCTTCGTGGAAGTTACCTCACCCTTTTCCGTTGTTCGAAGTGAACAGAGTGACATGGTTGTCACTGTCTTCAACTACCTGACTACATGTGTAGAG
Seq C2 exon
ATTTCTGTTCAGTTAGAAGCATCTGAGAATTATGAAGCAAGCATCAACACCCAGCGTAACACCGACAGTGAAGTCCTCCAGGCTGGAGAACAGAAAACATATGTCTGGACCATTATTCCTAAGACACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047228-'35-28,'35-26,37-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.068
Domain overlap (PFAM):
C1:
PF0020717=A2M=PU(9.9=25.7)
A:
PF0020717=A2M=FE(83.5=100)
C2:
PF0020717=A2M=PD(4.4=9.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCTGTGGACAGCATCAGC
R:
CCAGTGTCTTAGGAATAATGGTCCA
Band lengths:
228-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types