GgaEX6003328 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEW8]
Coordinates
chr1:75823584-75826141:-
Coord C1 exon
chr1:75826067-75826141
Coord A exon
chr1:75824630-75824795
Coord C2 exon
chr1:75823584-75823804
Length
166 bp
Sequences
Splice sites
3' ss Seq
TATTTTGTATTTTGTCCTAGCAT
3' ss Score
6.8
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GGTGGTGAAGAAGGTGAATACTCCCTTACAGCCTACATTGTGGCAGCATTGTTGGAGGCTGGACACTCTGTTCAG
Seq A exon
CATCCTGTGGTTTGGAATGGCATGAACTGTTTGGAGACTGCATTTAGCAATGGGGTCCACAACCTGTATAACCACGCCCTCTTTGCCTATGTTTATGGCTTAGCTGATAAACAGGAAAGATACCAATACTTTCTTGAGAAGTTAGATAAAAGAGCTACCAGAGATG
Seq C2 exon
GCGGTTCAGTTTACTGGCAGAGAGAAAATAAGCCACCAGCAGAACACTTCCCTGCTTTTTATTCCCGTGCCCCTTCTGCTGAGATTGAAATGACCAGCTATGTACTTCTGGCTTTGCTCAACAAAGCCGAACTCACACCGGATGACTTATCATATATTTCTCGCATTGTGTACTGGCTCGTGAAACAACAGAACCCATATGGTGGTTTCTCCTCCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930-'32-30,'32-29,33-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.041
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(9.6=100)
A:
PF076789=A2M_comp=FE(22.1=100)
C2:
PF076789=A2M_comp=FE(29.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTACATTGTGGCAGCAT
R:
GGTTCTGTTGTTTCACGAGCC
Band lengths:
242-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]