MmuEX1017834 @ mm10
Exon Skipping
Gene
ENSMUSG00000059908 | Mug1
Description
murinoglobulin 1 [Source:MGI Symbol;Acc:MGI:99837]
Coordinates
chr6:121880832-121887517:+
Coord C1 exon
chr6:121880832-121880906
Coord A exon
chr6:121881682-121881862
Coord C2 exon
chr6:121887415-121887517
Length
181 bp
Sequences
Splice sites
3' ss Seq
TTACCTTCTTCTCCCAACAGCAT
3' ss Score
11.2
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GGGGGAGTAGATGATGAAATGACCCTCTCTGCCTACATAACCATGGCCCTTCTGGAAAGTTCACTCCCAGCCACG
Seq A exon
CATCCTGTTGTCTCCAAAGCCCTGAGCTGCCTGGAGTCATCCTGGAAGACCATAGAACAAGAACGAAATGCCAGCTTTGTGTACACCAAGGCTTTGATGGCCTATGCTTTTGCTCTGGCGGGGAACCAGAATAAGAGAGATGAAATCCTGAAGTCACTTGATGAGGAAGCTATAAAAGAAA
Seq C2 exon
GTGACCAATCAGACACTGGCCTTCTCCTTCATCATTCAACAAGATATCCCAGTAAGGAACCTGCAGCCTGCCATTGTGAAAGTCTATGACTACTATGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059908_MULTIEX1-7/17=6-13
Average complexity
C3
Mappability confidence:
89%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.082 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(9.3=100)
A:
PF076789=A2M_comp=FE(23.3=100)
C2:
PF076779=A2M_recep=FE(38.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGAGTAGATGATGAAATGACC
R:
TAGTAGTCATAGACTTTCACAATGGC
Band lengths:
170-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types