GgaEX6005526 @ galGal3
Exon Skipping
Gene
ENSGALG00000016867 | ITGBL1
Description
NA
Coordinates
chr1:147646427-147653237:-
Coord C1 exon
chr1:147653115-147653237
Coord A exon
chr1:147649167-147649307
Coord C2 exon
chr1:147646427-147646567
Length
141 bp
Sequences
Splice sites
3' ss Seq
AAAATTTGTTTTGGGTTAAGGCC
3' ss Score
2.45
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
GTACATGTCAGTGTGGCAGGTGTAAATGTGTAAACTCAGGAGGAAGTGGACTGGTCTATGGCAAATTTTGTGAATGTGATGACAGAGAATGCATAGATGATGAGACCGAAGAGATTTGTACAG
Seq A exon
GCCATGGACAGTGTTACTGTGGAAACTGTTACTGTGAGGCTGGTTGGCATGGAGATAAATGTGAATTCCAGTGTGACATCACCCCTTGGGAGATCAAGAAAAGATGCACATCTCCAGATGGCAAAATCTGCAGTAATAGAG
Seq C2 exon
GCACATGTGTATGCGGGGAATGTACCTGCCATGATGTGGACCCAACTGGTGACTGGGGAGATATTCATGGAGATACTTGTGAGTGTGATGAAAGAAACTGCAAAGCAGTGTATGATAGATATTCTGATGACTTTTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016867-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(63.9=54.8),PF079748=EGF_2=PU(34.4=26.2)
A:
PF079748=EGF_2=PD(62.5=41.7),PF079748=EGF_2=PU(30.8=25.0)
C2:
PF079748=EGF_2=PD(66.7=54.2),PF079748=EGF_2=PU(40.0=29.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTCAGTGTGGCAGGTGTA
R:
GAATATCTATCATACACTGCTTTGCA
Band lengths:
244-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]