MmuEX0024698 @ mm9
Exon Skipping
Gene
ENSMUSG00000032925 | Itgbl1
Description
integrin, beta-like 1 [Source:MGI Symbol;Acc:MGI:2443439]
Coordinates
chr14:124239785-124245801:+
Coord C1 exon
chr14:124239785-124239907
Coord A exon
chr14:124243019-124243159
Coord C2 exon
chr14:124245661-124245801
Length
141 bp
Sequences
Splice sites
3' ss Seq
TAAAATTCTTTTGGGTAAAGGCC
3' ss Score
1.76
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
GTACATGTCACTGTGGCAGGTGTAAGTGTGATAATTCAGATGGACATGGACTCATTTATGGTAAATTTTGTGAATGTGATGATAGAGAATGCATAGATGATGAAACAGAAGAAGTATGTGGAG
Seq A exon
GCCATGGGAAGTGTTACTGTGGAAACTGTTACTGTGAGGCTGGTTGGCATGGCGATAAATGCGAGTTCCAGTGTGACATCACCCCATGGGAAAGCAAGCGAAGATGCACATCTCCAGATGGCAAAGTCTGTAGCAACAGAG
Seq C2 exon
GAACATGTGTATGTGGTGAATGTTCTTGCCATGATGTTGATCCAACTGGGGACTGGGGAGACATTCATGGGGACACGTGTGAGTGTGATGAAAGGGACTGCAGAGCTGTTTATGATCGATACTCTGATGATTTCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032925_MULTIEX1-3/3=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(63.9=54.8),PF079748=EGF_2=PU(34.4=26.2)
A:
PF079748=EGF_2=PD(62.5=41.7),PF079748=EGF_2=PU(30.8=25.0)
C2:
PF079748=EGF_2=PD(66.7=54.2),PF079748=EGF_2=PU(40.0=29.2)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTCACTGTGGCAGGTGTA
R:
AGTATCGATCATAAACAGCTCTGCA
Band lengths:
243-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: