RnoEX0045273 @ rn6
Exon Skipping
Gene
ENSRNOG00000004516 | Itgbl1
Description
integrin subunit beta like 1 [Source:RGD Symbol;Acc:1560635]
Coordinates
chr15:110241678-110248309:+
Coord C1 exon
chr15:110241678-110241800
Coord A exon
chr15:110245537-110245677
Coord C2 exon
chr15:110248169-110248309
Length
141 bp
Sequences
Splice sites
3' ss Seq
TAAAATTCTTTTGGGTAAAGGCC
3' ss Score
1.76
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
Exon sequences
Seq C1 exon
GTACATGTCACTGTGGCAGGTGTAAGTGTGATAATTCAGATGGACATGGACTCATTTACGGTAAATTTTGTGAGTGTGATGATAGAGAATGCATAGATGATGAAACAGAAGAAATATGTGGAG
Seq A exon
GCCATGGGAAGTGTTACTGTGGAAACTGTTACTGCGAGGCTGGTTGGCATGGAGATAAATGCGAGTTCCAGTGTGACATCACCCCCTGGGAAAGCAAGCGAAGATGCACATCTCCAGATGGCAAAGTCTGTAGCAACAGAG
Seq C2 exon
GAACATGTGTATGTGGTGAATGTTCTTGCCATGATGTTGATCCAACTGGCGACTGGGGAGACATTCATGGAGACACATGCGAGTGTGATGAAAGGGACTGCAGAGCTGTTTATGATCGATACTCTGATGATTTCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004516-'3-7,'3-6,4-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(63.9=54.8),PF079748=EGF_2=PU(34.4=26.2)
A:
PF079748=EGF_2=PD(62.5=41.7),PF079748=EGF_2=PU(30.8=25.0)
C2:
PF079748=EGF_2=PD(66.7=54.2),PF079748=EGF_2=PU(40.0=29.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTCACTGTGGCAGGTGTA
R:
AGTATCGATCATAAACAGCTCTGCA
Band lengths:
243-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]