GgaEX6006030 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:174774115-174775578:+
Coord C1 exon
chr1:174774115-174774214
Coord A exon
chr1:174775008-174775071
Coord C2 exon
chr1:174775514-174775578
Length
64 bp
Sequences
Splice sites
3' ss Seq
TGACTGTTCCATTTTCACAGGTC
3' ss Score
10.81
5' ss Seq
CTGGTTGGT
5' ss Score
4.67
Exon sequences
Seq C1 exon
AATGGTTACTCTTCTTCGAGTTCTGAGAATTGTTATCTTAATAAGAATATTTCGCCTGGCTTCACAGAAGAAACAACTTGAAGTGGTAACCAGAAGAATG
Seq A exon
GTCTCTGAAAACAAAAGGCGTTACATGAAAGATGGTTTTGATCTGGATCTCACTTATGTTACTG
Seq C2 exon
ATCGTGTTATTGCAATGTCTTTTCCATCTTCTGGGAAGCAGTCTTTCTATAGGAATCCTATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017031-'9-6,'9-5,10-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(29.2=100)
A:
PF0052026=Ion_trans=PD(15.9=81.8)
C2:
PF0078215=DSPc=PU(4.7=27.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTACTCTTCTTCGAGTTCTGA
R:
AAAGACTGCTTCCCAGAAGATGG
Band lengths:
144-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]