RnoEX0093125 @ rn6
Exon Skipping
Gene
ENSRNOG00000024837 | Tpte2
Description
transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 [Source:RGD Symbol;Acc:1305825]
Coordinates
chr16:74611169-74612935:-
Coord C1 exon
chr16:74612836-74612935
Coord A exon
chr16:74612657-74612720
Coord C2 exon
chr16:74611169-74611233
Length
64 bp
Sequences
Splice sites
3' ss Seq
TTTATGATCTCCCAATTCAGGTT
3' ss Score
9.02
5' ss Seq
CTGGTTGGT
5' ss Score
4.67
Exon sequences
Seq C1 exon
ACTGGCAGTCTTACTTCGGCCTCTGCGACTGCTCATCCTGGTAAGAATTTTGCAGCTGGCCCATCAGAAGCGACAACTGGAAAAGCTGACTCGGCAGCTG
Seq A exon
GTTTCGGGTAACAAGCGACGCTACAAGAAGGATGGCTTCGACCTGGACCTCACTTACGTCACTG
Seq C2 exon
AGCGCATTATTGCCATGTCATTTCCATCATCTGGAAGGGAGTCCTTCTATAGAAATCCAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024837-'21-22,'21-21,22-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(32.4=100)
A:
PF0052026=Ion_trans=PD(5.9=27.3)
C2:
PF0078215=DSPc=PU(2.4=13.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCTTACTTCGGCCTCTGC
R:
AGGACTCCCTTCCAGATGATGG
Band lengths:
140-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]