MmuEX6034808 @ mm10
Exon Skipping
Gene
ENSMUSG00000031481 | Tpte
Description
transmembrane phosphatase with tensin homology [Source:MGI Symbol;Acc:MGI:2446460]
Coordinates
chr8:22335359-22336559:+
Coord C1 exon
chr8:22335359-22335458
Coord A exon
chr8:22335613-22335676
Coord C2 exon
chr8:22336495-22336559
Length
64 bp
Sequences
Splice sites
3' ss Seq
TTTATGATTTCCCAATTCAGGTA
3' ss Score
9.11
5' ss Seq
CTGGTTGGT
5' ss Score
4.67
Exon sequences
Seq C1 exon
ACTGGCAGTTTTACTGCGGCCTCTACGACTGCTCATTCTGATAAGGATTCTGCAACTGGCTCATCAAAAGAGACAACTCGAAAGGCTGACCAGGAAGCTG
Seq A exon
GTATCGGGTAACAAGCGACGCTACAAGAAGGATGGCTTTGACCTAGACCTCACTTACGTCACTG
Seq C2 exon
AGCGTATTATTGCCATGTCATTTCCATCGTCTGGAAGGGAGTCCTTCTACAGAAATCCAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031481-'21-17,'21-16,22-17
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(32.4=100),PF145661=PTPlike_phytase=PU(8.8=38.2)
A:
PF0052026=Ion_trans=PD(5.9=27.3),PF145661=PTPlike_phytase=FE(14.3=100)
C2:
PF145661=PTPlike_phytase=FE(14.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACTGCGGCCTCTACGACT
R:
AGGACTCCCTTCCAGACGATG
Band lengths:
136-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types