HsaEX7007723 @ hg38
Exon Skipping
Gene
ENSG00000217576 | RP11-248G5.8
Description
NA
Coordinates
chr13:52279841-52280961:-
Coord C1 exon
chr13:52280862-52280961
Coord A exon
chr13:52280652-52280715
Coord C2 exon
chr13:52279841-52279905
Length
64 bp
Sequences
Splice sites
3' ss Seq
TAATGGTTTTAAACTCTCAGGTT
3' ss Score
5.53
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
ATGGACACGTTTATTTCGACTTCTACGACTTATCATTCTGATAAGAGTTTTTCATCTGGCTCATCTAAAAAGACAACTTGGAAAGCTGATAAGAAGGCTG
Seq A exon
GTTTCAGGAAACAAAAGGTGATACGAAAGTGATGGATTTGACCTAGACCTCACTTATATTACAG
Seq C2 exon
AACATATTGTCGCTATGTCGTTTCCATCTTCGGGAGGCCAGTCTTTCTATCGGAATCCAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000217576-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACACGTTTATTTCGACTTCT
R:
AAAGACTGGCCTCCCGAAGAT
Band lengths:
145-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains