GgaEX6006402 @ galGal3
Exon Skipping
Gene
ENSGALG00000017146 | PARP4
Description
NA
Coordinates
chr1:183547378-183550289:-
Coord C1 exon
chr1:183550187-183550289
Coord A exon
chr1:183549167-183549299
Coord C2 exon
chr1:183547378-183547848
Length
133 bp
Sequences
Splice sites
3' ss Seq
TCCCATTTCTTCTTCCTTAGGCA
3' ss Score
10.13
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
Exon sequences
Seq C1 exon
GATGGCTCTTGGAATCTCAGTCCACAGTTGGGAAAAATCTTGAAATTTGATGTTGATTATTTAATTAATCACTTCCTTATTAGAAATGGCATTCAGTCACTCG
Seq A exon
GCATAAAGGGAAAAGAAAAGCTACTGAAGTTGATTGCTACTCTTCTTGTGCTACAGTTCATACGCTGTGCAAATGAACTGCAAGGGATAGTCTTCAAATCACTGATGAAACTGGACAACTTAACAACTTCAAG
Seq C2 exon
CGGTGTTCACTGGGCTTTTGAGTCCATCAAGAAGGCAACAGAGTGGGTAAAAAGAGTTGAAGGCCAATTTCCATCTATTTGCTATCGACTTGAACTTGGAAAAGACTGGGATTCTGCCACCAAGATGATACTGGGGATCAAATGTAACTAACAGCAGCTCTCTTTCCACTTAAAACATTTCATGATTGGGATTGTTTAAGTTAATAGCAATGTCGGCCTTTCTTTCTGTTTTACATATTTTAACCGAGTGATTTTCACCTTATGTTATTCTTGAATAATCTTCATAGTCACAGACAAATGCTCCTGGTGCTGTTATTGTACCTCTGTTGGTTTTATCTCTTCTGAACTCTTCTCTTCTTCTGTGAGAGCACCATAAGGCGTAGCGCAGTCACTCGGCTCAGTGCCGCGGTGTGTTCTGAGGGATACCGGTGTGCTCAGCAAAGCCCTAATAAACACCTTCACAGTACAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017146-'40-41,'40-40,41-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAATGGCATTCAGTCACTCG
R:
AGAAAGAAAGGCCGACATTGCT
Band lengths:
249-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]