BtaEX6056693 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025400 | PARP4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:HGNC Symbol;Acc:HGNC:271]
Coordinates
chr12:36656631-36669487:-
Coord C1 exon
chr12:36669388-36669487
Coord A exon
chr12:36661582-36661714
Coord C2 exon
chr12:36656631-36656990
Length
133 bp
Sequences
Splice sites
3' ss Seq
AACAAATGCTTCACTTCCAGGTG
3' ss Score
8.82
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GATGGATGCTGGAAACTTACACAAGAACTGGGATTTATATTAAAACTTAATACAAATATTTTAAACAGCTTTCTTGAGCAAAAAGGCATTCGATCTTTAG
Seq A exon
GTGTAAGAGGAAGAGAGCGCCTTCTAGATCTGATCGCCACGTTTCTAGTGCTGCAGTTCCTTCGCACCAAGTTGGAACAGGAGGGAATAATCGTCAAATCGCTGATGAGACTGGATGATGCTTCCATTCCCAG
Seq C2 exon
GAATATTCCCTGGGATTGCGAGAAAATAAAGAAAGCCAGTGAGTGGCTCAGAAGAACTGAAGGGCAGTACCCATCCATCTGCCAGCGGCTGGAGCTGGGTAAAGACTGGGACTCCGCCACCAAGCAGCTGCTGGGTATCCTGCCCAGAGATGCCGCCTCCCCTCCTCACAGGCTCCTTAAGCACAGCCAAGGCTGACGCACATGCACTTGTCTTTTAACATGCACTCATGCCTCATGTATATGATAATCAGATATAATAGATGCCTATAATGAAATCTAATTATGATTTTATTCAGTATAGCAATCACTTTAAAATAAATGGAAAAAGGCTATTGTTTCAGTGAACTAACAAGCAACTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025400-'35-44,'35-42,39-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSBTAT00000035651fB5010
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTTTCTTGAGCAAAAAGGC
R:
AAGACAAGTGCATGTGCGTCA
Band lengths:
250-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]