MmuEX6041748 @ mm10
Exon Skipping
Gene
ENSMUSG00000054509 | Parp4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:MGI Symbol;Acc:MGI:2685589]
Coordinates
chr14:56652248-56659794:+
Coord C1 exon
chr14:56652248-56652347
Coord A exon
chr14:56655482-56655614
Coord C2 exon
chr14:56659238-56659794
Length
133 bp
Sequences
Splice sites
3' ss Seq
AGATCTTTGGTTTTTTTTAGGTA
3' ss Score
9.77
5' ss Seq
TAGGTACTT
5' ss Score
5.6
Exon sequences
Seq C1 exon
AATGGTTTTTGGAAGCTGACACCAGAACTAGGACTTATATTAAACCTTAATGTAAATGCTCTGCTCACTTCTCTTGAAGAAAAGGGCATTCGATCTCTAG
Seq A exon
GTACAAAAGGGCGAGAGCGTCTCCTGGATCTGATTGCCACTTTGCTCGTACTGCAGTTTCTTTATACCAAGTTGGAACAAGAAGGAATGGTTGCCAAGTCTCTGATAAAGATGGATGACGCCTTCATTTCTAG
Seq C2 exon
GAATATTCCATGGGCTTTTGAGAACATAAAGAAAGCAAGAGAATGGGCCAGAAAGACAGAAGGACAGTATCCATCTATCTGCCAACGGCTTGAGCTGGGTAAAGACTGGGAGTCAGCCACAAAGCAACTACTGGGAATTCAGCCCCAAGCCAACACTTCTCTTCACCGAATTCTATACTACAGCCAAGGCTGAAGCCAATGAAATTGCATTTTAAAACTTTCTTTTATTTCTTTTGTTATTGTTTTGTTTTTGTTTTTTTTTTTTTCAAGACAGGGTTTCTCTGTGTAGTCCTGGCCATCCTGGAACTCACTCTGTAGAGCAGGCTGGTCTCACACTCAAGGGATCTGCCTGCCTCTGCATTCCAAGTGCTGAGATTAAAGGCATCCACCACTGCTCTGATGCCTTTCTCATATTTCTATGTAGAAAATAATCAAATAGTAAAATGTACCAATAATGACGTGTAATACGTGTTAAATGTAGCTACAGCCCCTTTAAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054509-'54-56,'54-55,57-56
Average complexity
S
Mappability confidence:
86%=67=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTTTTGGAAGCTGACACCA
R:
TGTTGGCTTGGGGCTGAATTC
Band lengths:
253-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types