DreEX0053579 @ danRer10
Exon Skipping
Gene
ENSDARG00000069934 | parp4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:ZFIN;Acc:ZDB-GENE-070912-387]
Coordinates
chr9:20688996-20690841:+
Coord C1 exon
chr9:20688996-20689098
Coord A exon
chr9:20689390-20689522
Coord C2 exon
chr9:20689597-20690841
Length
133 bp
Sequences
Splice sites
3' ss Seq
GTCAGATGTTTGTGTGTCAGGTG
3' ss Score
6.58
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
GATGGATACTGGGAGTGCACTGGCAGGATGAGCAGATTTTTCAACCTGGACGTCGACTTTTTTGCCAACATTTTCCTTAAGGAGAAAGGCATCCAATCTTTAG
Seq A exon
GTGTGAAAGCTCATGCTGATATTCTGAGGCTGCTGGCGACTCTGCTGGTGCTGCAGCTGATCCGGGTGAAGAAGCTGGAGGTGGGACGGCTGCTCGAGTCTCTCCTCCGACTCAAAGAGTCCCAGGAGCCCAG
Seq C2 exon
ACTGATGTACTGGGAGGCGGTGAAGAGGGCCGTGGACTGGGCCTGTCAGACAGACAGACAGTATCCGTGTGTGTGCAGCAGGCTGGAGATCGGCAGGGATTGGGAATCGTCTACACGTCAGCTACTGGGCTGTGATTCTCCACACCCGTATTCTCCTCTCAAACCTGTTCTGGAGAGACGGATGGATGTTTAAGTCATGTGGAAACTGGACACACACTTCAGTCAAAATTTACTCTCTGCTTACTTCAAAGTGTTTGTAACATTATACTGGTTATAACACTGGCCCTAAAGTATATTTGGATGCCTTTGGGCTTTATAAAGTCTCAATTTCATTGCCTTAGAATTATCTACCCAAGTGCTTTTTTCTGCATGTTTTAAGTTTTAATCTTGGGATTCAGTGATATTTTTAGAAGATGTGGTTCATGTTATTTCCTTAAAGCATTAGTTGTGCCAAACATGAAAATTGTAGCTTTAGCGCTAGTCCTACCAGGAAGACCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069934-'34-34,'34-33,35-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATACTGGGAGTGCACTGG
R:
GTGTGGAGAATCACAGCCCAG
Band lengths:
246-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]