HsaEX6039567 @ hg38
Exon Skipping
Gene
ENSG00000102699 | PARP4
Description
poly(ADP-ribose) polymerase family member 4 [Source:HGNC Symbol;Acc:HGNC:271]
Coordinates
chr13:24420926-24431476:-
Coord C1 exon
chr13:24431377-24431476
Coord A exon
chr13:24426466-24426598
Coord C2 exon
chr13:24420926-24421314
Length
133 bp
Sequences
Splice sites
3' ss Seq
CGGAGTTTTTTTCCTTTTAGGTG
3' ss Score
9.87
5' ss Seq
CAGGTGGCT
5' ss Score
2.97
Exon sequences
Seq C1 exon
GATGGCTTCTGGAAACTTACACCAGAACTGGGACTTATATTAAATCTTAATACAAATGGTTTGCACAGCTTTCTTAAACAAAAAGGCATTCAATCTCTAG
Seq A exon
GTGTAAAAGGAAGAGAATGTCTCCTGGACCTAATTGCCACAATGCTGGTACTACAGTTTATTCGCACCAGGTTGGAAAAAGAGGGAATAGTGTTCAAATCACTGATGAAAATGGATGACGCTTCTATTTCCAG
Seq C2 exon
GAATATTCCCTGGGCTTTTGAGGCAATAAAGCAAGCAAGTGAATGGGTAAGAAGAACTGAAGGACAGTACCCATCTATCTGCCCACGGCTTGAACTGGGGAACGACTGGGACTCTGCCACCAAGCAGTTGCTGGGACTCCAGCCCATAAGCACTGTGTCCCCTCTTCATAGAGTCCTCCATTACAGTCAAGGCTAAGTCAAATGAAACTGAATTTTAAACTTTTTGCATGCTTCTATGTAGAAAATAATCAAATGATAATAGATACTTATAATGAAACTTCATTAAGGTTTCATTCAGTGTAGCAATTACTGTCTTTAAAAATTAAGTGGAAGAAGAATTACTTTAATCAACTAACAAGCAATAATAAAATGAAACTTAAAATATTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102699-'75-87,'75-83,78-87
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTCTGGAAACTTACACCA
R:
CACAGTGCTTATGGGCTGGAG
Band lengths:
255-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains