HsaINT1026181 @ hg38
Intron Retention
Gene
ENSG00000102699 | PARP4
Description
poly(ADP-ribose) polymerase family member 4 [Source:HGNC Symbol;Acc:HGNC:271]
Coordinates
chr13:24420926-24426598:-
Coord C1 exon
chr13:24426466-24426598
Coord A exon
chr13:24421315-24426465
Coord C2 exon
chr13:24420926-24421314
Length
5151 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGCT
5' ss Score
2.97
3' ss Seq
AACTTTTTTTTTTAATCTAGGAA
3' ss Score
9.04
Exon sequences
Seq C1 exon
GTGTAAAAGGAAGAGAATGTCTCCTGGACCTAATTGCCACAATGCTGGTACTACAGTTTATTCGCACCAGGTTGGAAAAAGAGGGAATAGTGTTCAAATCACTGATGAAAATGGATGACGCTTCTATTTCCAG
Seq A exon
GTGGCTTTAACTATAGTATTATGCAACTTATTTATATTTTCAACTATTTATTTAATAAACCTTAGAAACAGCTATAGGGAATTATCTTACATGTGTACACTATAAGTATGTAGCAAGAGAATTTGTTTGCAGGTGACAGCTTGCCCATAGTCTCCTGTGGCGGGCAGGGCTGATGTATTTGTGCCTTGGGCTGCACAGGAAATGGGCTCAAAGAGTTTCAGTGCAGCTCCCGCTGGAGGCTGGCGCTTCTGGGCTCTGGATGTGGTACTCTTCACTGCAGTCTGCTGATCCTGGGTGCCTCCAGAAGACCCACAATGTGACTGTTGGGCCCAGCCCTGTTCCCAACAATGGCAGGGCCTGGGACAAGAATACAATACAAGTATTTAAAGTTTATAACTTTGTAGTTTATAACAAGTGTTTAAAGGTTATAAATCAAACTAGCAAACTATTAGATTAAATGTGTTCTAATCTCCTCCCTTGGCAAATACAACTTCATAACCACCTGGAAGGCCAGGTTCAAATTCGGCCCTTGGTTGACCCCCAGCACCCTAAGAGGGTTTGCCTGCAAACGTGAATACCCCACCCCACCCATCAAAATGCCATCCAGACCCCATGCCAGTGCCCCCTCACACCAGCCACCTTGTAGCACCAGTGAGATGGCAACACTGTTCAAACTCAGGATGACAGACCAGGGAAGACCCTGGAAGTGGACTCAGGGCCATGTGGTCAGGGATGCTGGAGTTGCAGGGTCTAAAAAGGAGGATATGGGCTCTGGGGTGGGCATATTCTCTTGTCCCTACAGACCCCCCACCCCATGGCAAGAGGGTCAAGACCAGAGTAGGATCCCTCTGAGATATATAGATATAGATATAGATATAGATATAGATATAGATATACACACACACACACACACACACACACATGCACACATGCATACACATATACACATATACATACACATGTAATTGGCTTATGTTCTTTTAAAGGCAAGATAAGGGGAAAACTAATCAAACTAATAATATTATTGCTACGGGGATTTGATAGAGGGGACAAAGATAGAAGCTAGGTTTCTCCTAGTGTGCTTTGTTTTGCAGTTTTGACTTTGGAACTGTGTAAATATTTTACATAATAATGCATAAGATTGATATTTATTTATTTATTTATTGAGACAAAGTCTGGCTCTATCGCCCAGGCTGGAGTGCAGTGGTGCAATCTCAGCTCACTGCAACCTCCGCCTCCTGGGCTCAAGCCATCCTCCCACCTCAGCCTCCTGAGTAACTGGGACTACAGGTGTGCACCACCACGCCCTGCTAATTTTGGTATTTTTGTAAAGAAGGGGCTTTGCCATGTTACCCAGGCAGGTCTGGAACTCCTGAACTCAAGCAATCCTCCCGCGTCAGCCTCCTGAAGTGCTGGGATTACAGACATGAACCACTGTGCCCATCCTGGGAATTAATTTAAGGTGAATTTAAAACATAGTACTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACGAGGTTGGGAGATCGAGACCATCTTGGCTAACATGGTGAAACCCTGTCTCTACTAAAAAAAATACAAAAAAAAAAAAAAATTCGCCAGGTGTGATGGCGGGTGCCTGTAGTCCCAGGTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCAGAGCTTGCAGTGAGTCAAGATCGTGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAGTACATAATTTGACTATATCTCTCTAGTGGGATAGTACCTAAGGATTAAAAAATATTACAAAGAAATCTCACTGGGAGTAGTCATGGTGTTAATAATACTTTTGATTTGTTATTTTGGAAGGTAGATATTAATATTGTTAGAAACTAATATGTATAAAATCAAAGAAGTTAAACAAAACCCCTTGATTTCTAAACTTGAATTAGATCAGAGAATAGAGGAACATGTTACTTGACACCATGGAAATGCAGTCAGCGAAGTCTGGAATGTGGGGAAATAAATGGCAAGAGAAAAATAAATGGCAATAGAAAAAAAAGGTTGAGGAGCAGAACCTGTAAATAAACCTTTAGAGACATATCAACCAAAAGCAAGGGTAGACCTTGTTTAGGTCCTGATACAAACAAAACCCACTGCATTTAAAAAAATGAGATAGGAAAAATTAAACACTACCTGGATATTTTATGATATTAAAGAAATATTGATAATTATTTTTTAAGTGTCATGATTAAGAAAAAGTTCTCAAACACAAAACAGGTGTTCAGGAAGTTCTGGGCTAGGCAAATTGGCTCATGCCTATAATCCAAGCACTTTAGGAGGCTGAGACGGGAGGGTCACTTGAGCCCACCAAGATCAAGCCCAGAAGTTTAAGACCAGCCTAGGTAACCAATGAGACTGCCATCTCTACAAAAAACTTTTTGTAATTACCCAGGCATTGCTGGGCACGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGAGGATTGCATCCAGGAGTTCAAGACCAGCCTTGACCACATAGCAAGACCCTGTCTCCACAAAAAAATTTAAAATTACCCGAGTGTGGTAGTGTGTGACTACTCAGGAAGCTGAGGTCGGGGGGATTGCTTGAGCCCAGGAGGTTGAGGCTGCAGTGAGTTGTGATCGTGCCACTGCACTCCAGCCTGGGCAACAAAGCGAGACCCTGTCTGAAAAAAAAAGAAAATCATAATTTACTATATGTAATTTATACTTCCATTTTTTAAAAAGCAATACCTTCTCATTAGTTTGCCAAGAAAGATGAGAATTTATTTTGTTTTTCTATTTTGGGAGTTTTCTTTTTTTTTGTTTTGTTTTTATTTATTTATTTATTTTTTGAGGCCAGATCTCGTTCTGTCACCCAGGCTGGCGTGCAGTGGCACGATCTCGGCTCACTGCAACCTCCACCTCCCAGTTTCAAGCAATTCTCGTGCCTCAGCCTCCTGAGTAGCTGGAATTAGAGGTGTGCACAGCTAATTTTTATATTTGTGGTAGAGATGAGGTTTCGCCATGTTGGCCAGGCTGGTCTCGAACTCTGGCCTCAAGTGATCTGCCTGCATTGGCCTCTCAAAGTTCTGGGATTACAGGAGTGAGCCACTACACTAGCCTATTTTTTGTATTTTATTTTAAAATAAACCAGTGCCACTTGCCAAGAGGATTAATTAAATAAATATCAAAGAAAAAACACTTTGAACAGCTAGGAGGTGGGACTAAAAAATTAGTATTGACTTAATAGGCACATCCAAAGACGCATTTATTCTATTTAGATCATTGCCAATTATTAATATTATAGCTGTTAAAACAAGTATAAACTTTGAACCTGCTTTTGAACTGTAATATCATAAAGTAAAGATTTTCAAAATTGATCAAGTATATTCCAGCATATTGCTCTTACTCCATTACTGCTACTGTGCTAGCAAAATGGTTTGTTGGCACTTGAGTACATAAGACAAACAATTTTAGGCCAGACACGGTGACTCACAGCTGTAATTCCAGCACTTTGGGAGGTTGAGGCGGACAGATCACAAGGTTAAGAGATTGAGACCATCCTGGCCAAGATGGTGAAACCCCGTCTCTACTAAAAATACAAAAACTAGCTGGGTGTGGTGGCACGTGTCTGTAATCCCAGCTACACAGGAGGCTGAGGCAGGAGAATCACTTGAACCAAGGAGTCAGAGGTTGCAGTGAACCGAGATCGTGTCCCTGCACTCCAGCCTGGCGACACAGTGAGACTCCATCTAAAAAAAAAAATTAAATATTTTTTATTTCCTGTTTATTGCATATTTGAAACTTTGTTCTATATTTTCTATTTCAGGATGTACATAACATTGATGCAAGAGCACATTATATGGGGGTGTAGGCACAAGATTTTCTTGCTAGCGGAATGTGAACCAAAAAGTGTAGAGGCCAATCAGTAAAAATATTCAAAGCCAGTTTTGTTGTTTTCAGCAGTTAGTAACTATCAGTAGATGAATATTTACTAGGAAACATTGGTCTTTTAACCACTTTGGGCATGCTTCTTATTTAGTATGTTCATCATGATTTAGTATCATGACATTCAGCGAACATTTATTGAGTGCCTACTGTGCACTAGGGACTAGTAAGCATGTTAAGTTTGTAAGCTTTGTTGATTTCCACCACAAACCCATAGGACCTCAGGTTATTCTCATAATTGAGGAAACTGAGATTCCCAGTGTTGAATGAAAGCCACACAGTATCACATGGCCAATATCATGTGATTGCAGAGTCAGGACTCAAACCCAGCTCTTAACCACCACGCTATACTGACGGCCCTTTCCCAGTTCACAGGGAAAATTCAGGAACAGGGAGAGAATTTTCAAAATATTAAGTTTCCCCATAGAATTTTCTGAAGAACTTTGGTATATGTTGCCCCTTGTTCACTAACAAGTTCTAGCAGATGACAGAACAAATGAGGAAGTAGCTAATTAATATTAATGAACAACCTCAGAATTTTTCTGAGTGTTGAATAGACTTGAATATTCAACAGTCTCAAATATTTGACACCATTTAGTGGACACAGACTTGACTCGATATGCTTATTCTACCAAGTTGTTCCTGGTTTACGTGACACAACTGAATGTATGCCAGTTTCATGGGGGACTCTCAGATATTCTGAAGGTACCTAATCAAGTCAGTACAGTGGGAAGGAGAGAGAAACAGAAGCCTCATTTGTGAAATAGTACTTGAGTTTGTGCGTGAAGAATGGATAGGATTTAGACTGAGAAGCGTGGAAAGGGGACAACCATAAACAACTGTAGAGCGGCTGGAACGTGAGCTGTGCTGCAGGCAGCAGGGATGCCTGGAGGCACGTGGAAGCCAGGAGGTGGCGGGCACAGGGCACTTGACAATGCAGTGCATAAGCTCAAGGTCAGACGGGCAGAAGAACTTCCGTAAGATGCCAAGGAAAACTGCTTTTATTAAATATCTTAATTTTTGGCAGAATCATTTTGTCTGATATAATGTGATGGGTTTAGTACCACATTACATTTCACATGTTATATTCTGAAATCTGAAACTTTTTTTTTTAATCTAG
Seq C2 exon
GAATATTCCCTGGGCTTTTGAGGCAATAAAGCAAGCAAGTGAATGGGTAAGAAGAACTGAAGGACAGTACCCATCTATCTGCCCACGGCTTGAACTGGGGAACGACTGGGACTCTGCCACCAAGCAGTTGCTGGGACTCCAGCCCATAAGCACTGTGTCCCCTCTTCATAGAGTCCTCCATTACAGTCAAGGCTAAGTCAAATGAAACTGAATTTTAAACTTTTTGCATGCTTCTATGTAGAAAATAATCAAATGATAATAGATACTTATAATGAAACTTCATTAAGGTTTCATTCAGTGTAGCAATTACTGTCTTTAAAAATTAAGTGGAAGAAGAATTACTTTAATCAACTAACAAGCAATAATAAAATGAAACTTAAAATATTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102699:ENST00000381989:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains