GgaEX6007301 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr10:1641353-1642021:+
Coord C1 exon
chr10:1641353-1641471
Coord A exon
chr10:1641552-1641655
Coord C2 exon
chr10:1641844-1642021
Length
104 bp
Sequences
Splice sites
3' ss Seq
TAACACATCTTTCCATTTAGGAG
3' ss Score
8.22
5' ss Seq
GTGGTGGGT
5' ss Score
4.29
Exon sequences
Seq C1 exon
ATGACACCAGACTCCTTGATCTACAAAACAAGTTTATTCTATAAACCTACTCCTGTTGGCAACATGGTCATTGTAAGGACCAGCCCAGCTGTAGTTCCTATTGAGTGTCACTATCCCAG
Seq A exon
GAGGAGCAATGTGAGCAGCAATGCTGTCCGACCTACGTGGGTTCCCTTCCACTCCACGCTGTCAATGGAAGAGAAGCTGGTGTTCTCCCTGCGCCTCATGAGTG
Seq C2 exon
ATGACTGGAGGACCGAGAGGCTCTCCAATGGTGTCCAGCTGGGGGAAAGCCTGCATCTCCAGGCTGATGTCATGGCTGGGAACCACATACCACTGAGGCTGTTTGTGGATGACTGCGTGGCTACTCTGAGCCCTGACAGGAACTCCTCTCCCCGATATGCCCTGATTGACCTCAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001721-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(15.0=100)
A:
PF0010018=Zona_pellucida=FE(13.5=100)
C2:
PF0010018=Zona_pellucida=FE(22.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCTACTCCTGTTGGCAAC
R:
ATCAGGGCATATCGGGGAGAG
Band lengths:
243-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]