HsaEX0074517 @ hg19
Exon Skipping
Gene
ENSG00000188372 | ZP3
Description
zona pellucida glycoprotein 3 (sperm receptor) [Source:HGNC Symbol;Acc:13189]
Coordinates
chr7:76058832-76063472:+
Coord C1 exon
chr7:76058832-76058950
Coord A exon
chr7:76062244-76062347
Coord C2 exon
chr7:76063355-76063472
Length
104 bp
Sequences
Splice sites
3' ss Seq
AGCTGCTGTTCTTCTCTCAGGCA
3' ss Score
8.47
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GTAACTGACGATGCCCTGGTGTACAGCACCTTCCTGCTCCATGACCCCCGCCCCGTGGGAAACCTGTCCATCGTGAGGACTAACCGCGCAGAGATTCCCATCGAGTGCCGCTACCCCAG
Seq A exon
GCAGGGCAATGTGAGCAGCCAGGCCATCCTGCCCACCTGGTTGCCCTTCAGGACCACGGTGTTCTCAGAGGAGAAGCTGACTTTCTCTCTGCGTCTGATGGAGG
Seq C2 exon
CTGTCTTGTCGACGGTCTCACTGATGCCTCTTCTGCATTCAAAGTTCCTCGACCCGGGCCAGATACACTCCAGTTCACAGTGGATGTCTTCCACTTTGCTAATGACTCCAGAAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188372_MULTIEX1-2/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.033
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(15.5=100)
A:
PF0010018=Zona_pellucida=FE(13.9=100)
C2:
PF0010018=Zona_pellucida=FE(15.5=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAACTGACGATGCCCTGGTG
R:
GTTTCTGGAGTCATTAGCAAAGTGG
Band lengths:
234-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)