MmuEX0054015 @ mm9
Exon Skipping
Gene
ENSMUSG00000004948 | Zp3
Description
zona pellucida glycoprotein 3 [Source:MGI Symbol;Acc:MGI:99215]
Coordinates
chr5:136458509-136460401:+
Coord C1 exon
chr5:136458509-136458627
Coord A exon
chr5:136460032-136460135
Coord C2 exon
chr5:136460218-136460401
Length
104 bp
Sequences
Splice sites
3' ss Seq
AGCTGGAGTTTTCCCCACAGGCA
3' ss Score
6.48
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
ATGACGAAAGATGCCCTGGTGTACAGCACCTTCCTACTCCACGACCCTCGCCCTGTGAGTGGCCTGTCCATCCTCAGGACTAACCGTGTGGAGGTACCCATTGAGTGCCGATACCCCAG
Seq A exon
GCAGGGCAATGTGAGCAGCCACCCTATCCAGCCCACCTGGGTTCCCTTCAGAGCCACTGTGTCCTCAGAGGAGAAACTGGCTTTCTCTCTTCGCCTGATGGAGG
Seq C2 exon
AGAACTGGAATACTGAGAAATCGGCTCCCACCTTCCACCTGGGAGAGGTAGCCCACCTCCAGGCAGAAGTCCAGACTGGAAGCCACCTGCCGCTGCAGCTGTTTGTGGACCACTGCGTGGCCACGCCTTCACCTTTGCCAGACCCGAACTCCTCCCCCTATCACTTCATCGTGGACTTCCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004948_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(15.0=100)
A:
PF0010018=Zona_pellucida=FE(13.5=100)
C2:
PF0010018=Zona_pellucida=FE(23.5=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCTACTCCACGACCCTC
R:
GTGATAGGGGGAGGAGTTCGG
Band lengths:
255-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: