GgaEX6007794 @ galGal4
Exon Skipping
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8344182-8345551:+
Coord C1 exon
chr10:8344182-8344265
Coord A exon
chr10:8344980-8345114
Coord C2 exon
chr10:8345454-8345551
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCACTGTACTTTTAGTTT
3' ss Score
7.33
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTAGAATATAAATGTGAAGGATTTCTGGAGAAAAACAGGGATACAGTATATGAAGTTTTGATGGAAATCTTGAAAGAGAGCAAG
Seq A exon
TTTCGTCTGTGTGCAAACTTCTTTCAAGACAATCCAGTGTCCGTTTCGCCTTTCAGTTCAACTATAAGCATCAAATCTGCAAGACCTGTCCTCAAGTCACCTAACAAGCAGCTCCGGATGACAGTTGGCAGTAAG
Seq C2 exon
TTCCGGAGTTCTCTGTCTCTACTGATGGAGACACTCAACGCAACCACCCCTCACTACGTGCGATGCATAAAGCCTAATGATGAAAAGCGGCCTTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641-'17-16,'17-14,18-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.0=100)
A:
PF0006316=Myosin_head=FE(6.5=100)
C2:
PF0006316=Myosin_head=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAAGGATTTCTGGAGAAAAACA
R:
TCAAAAGGCCGCTTTTCATCA
Band lengths:
170-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]