MmuEX6067279 @ mm10
Exon Skipping
Gene
ENSMUSG00000033590 | Myo5c
Description
myosin VC [Source:MGI Symbol;Acc:MGI:2442485]
Coordinates
chr9:75267025-75270366:+
Coord C1 exon
chr9:75267025-75267108
Coord A exon
chr9:75269521-75269655
Coord C2 exon
chr9:75270269-75270366
Length
135 bp
Sequences
Splice sites
3' ss Seq
CCCACCCTGTTCCCTTCCAGTTT
3' ss Score
10.18
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
GTGGAGTACCAATGTGAAGGGTTCCTGGAGAAGAACAGAGACACTGTCTATGACATGCTGGTGGAGATCCTCAGAGCAAGCAAG
Seq A exon
TTTCATCTCTGTGCCGCCTTTTTTCAAGAAAGCCCTGTTCCGTCTTCTCCCTTTGGGGCGATGATCACAGTTAAATCTGCAAAGCAGGTCATCAAGCCGAACACCAAGCACTTCCGGACCACTGTTGGGAACAAG
Seq C2 exon
TTCCGCAGCTCTCTGTACTTGCTCATGGAAACCCTCAATGCCACCACACCCCACTACGTCCGTTGCATCAAGCCAAATGATGAGAAAATGCCCTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033590-'29-29,'29-19,34-29=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.0=100)
A:
PF0006316=Myosin_head=FE(6.5=100)
C2:
PF0006316=Myosin_head=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTACCAATGTGAAGGGT
R:
AAGGGCATTTTCTCATCATTTGGC
Band lengths:
178-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types