RnoEX6036561 @ rn6
Exon Skipping
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82208305-82211797:+
Coord C1 exon
chr8:82208305-82208388
Coord A exon
chr8:82210992-82211126
Coord C2 exon
chr8:82211700-82211797
Length
135 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCTGTTCCCTTCCAGTTT
3' ss Score
10.97
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
GTGGAGTACCAGTGTGAGGGGTTCCTGGAGAAGAACAGAGACACTGTCTACGACATGCTGGTTGAAGTCCTCAGAGCAAGCAAG
Seq A exon
TTTCATCTCTGTGCCGCCTTTTTTCAAGAAAGCCCTGTTCCGTCTTCTCCCTTTGGGGCAATGATCACAGTCAAATCTGCAAAGCAGGTCATCAAGCCGAACACCAAGCACTTCCGGACCACGGTTGGGAACAAG
Seq C2 exon
TTCCGCAGCTCCCTGTTCTTGCTCATGGAAACCCTCAATGCCACCACACCCCACTACGTCCGGTGCATCAAGCCAAATGATGAGAAGCTGCCCTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356-'19-18,'19-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.0=100)
A:
PF0006316=Myosin_head=FE(6.5=100)
C2:
PF0006316=Myosin_head=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACCAGTGTGAGGGGTTCC
R:
TCAAAGGGCAGCTTCTCATCA
Band lengths:
178-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]