GgaEX6007872 @ galGal4
Exon Skipping
Gene
ENSGALG00000004960 | FBN1
Description
fibrillin 1 [Source:HGNC Symbol;Acc:HGNC:3603]
Coordinates
chr10:9768989-9797163:-
Coord C1 exon
chr10:9797068-9797163
Coord A exon
chr10:9795421-9795516
Coord C2 exon
chr10:9768989-9769186
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTGCCTTCCCTTTGATACAGCTG
3' ss Score
9.04
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
TACAACACTGTAACATCCGGTGCATGAATGGAGGTAGCTGTAGCGATGACCACTGCCTCTGTCAGAAGGGATATACAGGAACGCATTGTGGACAGC
Seq A exon
CTGTTTGTGAAAATGGATGTCTAAATGGAGGAAGATGTGTTGCCCCAAACCGATGTGCATGCACATATGGATTTACTGGACCTCAGTGTGAAAGAG
Seq C2 exon
ATTACAGGACTGGCCCTTGCTTCACTTTGGTAACGAACCAGATGTGCCAGGGACAGCTCAGTGGAATAGTCTGCACAAAAACCCTTTGCTGTGCAACTGTTGGGAGAGCATGGGGCCACCCCTGTGAAATGTGTCCTGCCCAGCCGCATCCCTGTCGACGAGGCTTCATTCCAAACATTCGAACTGGGGCCTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004960-'7-5,'7-2,8-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0068312=TB=WD(100=64.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCCTCTGTCAGAAGGGA
R:
GGACACATTTCACAGGGGTGG
Band lengths:
182-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]