MmuEX6104588 @ mm9
Exon Skipping
Gene
ENSMUSG00000027204 | Fbn1
Description
fibrillin 1 [Source:MGI Symbol;Acc:MGI:95489]
Coordinates
chr2:125238342-125294374:-
Coord C1 exon
chr2:125294279-125294374
Coord A exon
chr2:125292339-125292434
Coord C2 exon
chr2:125238342-125238539
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCCTTATCTTGCAGCTG
3' ss Score
12.85
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
TCCAACACTGCAGCATCCGCTGTATGAATGGGGGCAGCTGCAGCGATGACCACTGTCTGTGCCAGAAAGGGTACATCGGCACTCACTGTGGACAGC
Seq A exon
CTGTCTGTGAAAGTGGCTGTCTCAACGGAGGGAGGTGTGTGGCCCCAAATCGGTGTGCTTGCACGTACGGCTTTACTGGACCCCAGTGTGAAAGAG
Seq C2 exon
ATTACAGAACAGGCCCATGTTTTACTGTGGTAAGCAACCAGATGTGCCAGGGACAGCTCAGCGGGATTGTCTGCACCAAAACACTTTGCTGTGCCACCGTGGGCCGAGCCTGGGGCCACCCCTGTGAGATGTGTCCTGCCCAGCCTCACCCCTGCCGCCGCGGCTTCATTCCCAACATCCGCACTGGAGCTTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027204-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0068312=TB=WD(100=64.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAAAGGGTACATCGGCAC
R:
AGGACACATCTCACAGGGGTG
Band lengths:
172-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: