GgaEX6009063 @ galGal4
Exon Skipping
Gene
ENSGALG00000003580 | MMP2
Description
72 kDa type IV collagenase [Source:UniProtKB/Swiss-Prot;Acc:Q90611]
Coordinates
chr11:3209085-3213228:-
Coord C1 exon
chr11:3213080-3213228
Coord A exon
chr11:3210890-3211018
Coord C2 exon
chr11:3209085-3209258
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTGTCTGATTTCTCCTGCAGAAC
3' ss Score
11.29
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
GATTATAGGCTATACCCCGGATTTGGATCCTGAGACAGTAGATGATGCCTTTGCCCGAGCCTTTAAAGTCTGGAGTGATGTCACGCCACTGAGATTTAACCGAATAAATGATGGAGAGGCAGACATTATGATTAATTTTGGCCGATGGG
Seq A exon
AACATGGTGATGGCTATCCATTTGATGGCAAAGATGGTCTCCTGGCTCACGCCTTTGCACCGGGGCCAGGAATTGGAGGAGACTCCCATTTTGATGATGATGAACTGTGGACTCTTGGAGAAGGGCAAG
Seq C2 exon
TGGTTAGAGTAAAGTATGGAAATGCAGATGGTGAATACTGCAAATTTCCCTTCTGGTTCAATGGTAAGGAATACAACAGCTGCACAGATGCAGGACGTAATGATGGATTCCTCTGGTGTTCCACAACCAAAGACTTTGATGCAGATGGCAAATATGGCTTTTGTCCCCATGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003580-'3-8,'3-6,4-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0041319=Peptidase_M10=FE(15.2=100)
A:
PF0041319=Peptidase_M10=FE(13.1=100)
C2:
PF0041319=Peptidase_M10=FE(17.6=100),PF0004014=fn2=WD(100=71.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGTCACGCCACTGAGAT
R:
GGGGACAAAAGCCATATTTGCC
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]